IEDB Analysis Resource

MHCI Weekly Benchmark results


Overall scores

Overall scores based on data sets submitted to the IEDB within a single week. The overall scores in the SRCC and AUC columns are calculated using performance values for only SRCC or AUC respectively. In the overall column, both evaluation types are used.

Datasets displayed in gray showed poor performance across all of the available predictors and are excluded from the overall ranking, pending further analysis.


Server Overall SRCC AUC
ANN 3.4 100 100 100
ANN 4.0 86 71 100
ARB 7 7 7
IEDB Consensus 29 29 29
NetMHCcons 93 86 100
NetMHCpan 2.8 50 50 50
NetMHCpan 3.0 96 93 100
NetMHCpan 4.0 BA 93 86 100
NetMHCpan 4.0 EL 86 71 100
NetMHCpan 4.1 BA 86 71 100
NetMHCpan 4.1 EL 0 0 0
PickPocket 36 36 36
SMM 25 21 29
SMMPMBEC 25 21 29
mhcflurry 1.2.0 43 43 43

Data set specific results

Detailed information for the evaluated data sets used in the calculation of the overall scores in the table above. Predictions from each participating server for the data sets listed below may be downloaded here.

IEDB
Reference
Allele Peptide
Length
Peptide
Count
Positive
Count
Measurement
type
ANN 3.4 ANN 4.0 ARB IEDB Consensus NetMHCcons NetMHCpan 2.8 NetMHCpan 3.0 NetMHCpan 4.0 BA NetMHCpan 4.0 EL NetMHCpan 4.1 BA NetMHCpan 4.1 EL PickPocket SMM SMMPMBEC mhcflurry 1.2.0
SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC SRCC AUC
 1038478   HLA-A*02:01   9   25   12   binary   0.856   0.994   0.855   0.994   0.811   0.968   0.825   0.974   0.855   0.994   0.844   0.987   0.855   0.994   0.855   0.994   0.855   0.994   0.855   0.994   0.727   0.920   0.827   0.978   0.822   0.974   0.822   0.974   0.833   0.981